Post-tsunami natural regeneration of coastal vegetation in the Hambantota district in south-eastern Sri Lanka

A qualitative rapid survey was conducted in 45 plots distributed in the gentle seashore vegetation andsand dunes (n = 13), coastal scrublands (n = 19), and mangroves (n = 13) along the coastline ofHambantota District, affected by the Indian Ocean tsunami. The objective of the survey was toinvestigate the natural regeneration of coastal vegetation 20 months after the tsunami disturbance21 plant species belonging to 19 families were recorded as the prominent plants regenerating inaffected mangroves, while 16 species in 15 families and 32 species in 23 families were observed asprom inent plants to regenerate in affected areas of the gentle sea-shore vegetation and coastalscrublands respectively.In tsunami affected mangrove stands Acanthus iltctfolius (in 50% of study plots), Achrosticumaureum (40%) and Lumnitzera racemosa (17%) were the dominant species establishing in openmuddy substrates, while Clerodendrum inerme (57%), Lumnitzera racemosa and Excoecariaaga//ocha (29% each) were regenerating in sand deposited in the mangrove patches.Ipomoea pes-caprae (85%), Scaevola taccada and Calotropis gigantea (23% each) were observedas the dominant species re-establishing in the gentle seashore vegetation, while Spinifex littoreusshows a slow rate of regeneration. Most of the destroyed Pandanus odoratissimus bushes facingthe beach are not regenerating. Instead a new row of Pandanus was observed regenerating immediatelybacking the original stands. Prominent species regenerating in coastal scrublands are Crotonbonplandianus and Gymnema sylvestre (37% each), Clerodendrum inerme (16%), Calotropisgigantea (10%) and Crateva adansonii (10%) and saplings of Azadirachta indica and Limoniaacidissitna .Invasive alien plants, mainly Opuntia dillennii have established well and spreading vigorously inaffected coastal scrublands (58%), some study plots of gentle seashore vegetation (31 %) as wellas on sand depositions in the affected mangroves (15%). This species was observed replacing thespaces occupied by destroyed Pandanus odoratissimus bushes and Spinifex littoreus beds.Invasive alien plants such as Prosopis juliflora and Lantana camara were also spreading intsunami disturbed coastal scrublands.

Phosphoproteomic Landscape of AML Cells Treated with the ATP-Competitive CK2 Inhibitor CX-4945

Casein kinase 2 (CK2) regulates a plethora of proteins with pivotal roles in solid and hematological neoplasia. Particularly, in acute myeloid leukemia (AML) CK2 has been pointed as an attractive therapeutic target and prognostic marker. Here, we explored the impact of CK2 inhibition over the phosphoproteome of two cell lines representing major AML subtypes. Quantitative phosphoproteomic analysis was conducted to evaluate changes in phosphorylation levels after incubation with the ATP-competitive CK2 inhibitor CX-4945. Functional enrichment, network analysis, and database mining were performed to identify biological processes, signaling pathways, and CK2 substrates that are responsive to CX-4945. A total of 273 and 1310 phosphopeptides were found differentially modulated in HL-60 and OCI-AML3 cells, respectively. Despite regulated phosphopeptides belong to proteins involved in multiple biological processes and signaling pathways, most of these perturbations can be explain by direct CK2 inhibition rather than off-target effects. Furthermore, CK2 substrates regulated by CX-4945 are mainly related to mRNA processing, translation, DNA repair, and cell cycle. Overall, we evidenced that CK2 inhibitor CX-4945 impinge on mediators of signaling pathways and biological processes essential for primary AML cells survival and chemosensitivity, reinforcing the rationale behind the pharmacologic blockade of protein kinase CK2 for AML targeted therapy

Detection of Ralstonia solanacearum in Asymptomatic Imported Seed Potato using a DNA-based Method

Potato is an economically important crop among vegetables grown in Sri Lanka that mainly relies on healthy seed potatoes. About 40% of the annual seed potato requirement is fulfilled by the import of seed potatoes from Netherland, USA, Germany and France. Import of seed potatoes makes possibilities to enter plant pathogenic pests and diseases to Sri Lanka. Bacterial wilt is one of the most destructive diseases of potato. Ralstonia solanacearum, which causes bacterial wilt of potato, is considered as an important quarantine significant plant pathogen in Sri Lanka. The currently available conventional methods such as culture methods, biochemical methods are time consuming, very laborious and not sensitive for the detection of R. solanacearum in imported seed potatoes. Although immunodiagnostic methods are rapid, the sensitivity is not enough to detect the bacterium in asymptomatic or latently infected seed potatoes. In this study, a DNA-based detection method was applied to screen seed potatoes imported into Sri Lanka and 5 out of 30 tested samples (17%) were positive for R. solanacearum. The seed potato samples detected as infected with R. solanacearum were further studied and it revealed that the Asian phylotype I and the American phylotype II were detected from seed potato samples imported to the country. Phylotype II (Race 3/biovar 2) was detected in seed potatoes imported from USA and France and both phylotype I and phylotype II (Race 3/biovar 2) were detected in seed potatoes imported from Netherland from where majority of seed potatoes are imported into the country. The quarantine measures should be strictly followed to avoid the spread and establishment of phylotype II, Race 3/biovar 2 strains within the country, as it is the extremely destructive potato pathogen which have a restricted distribution in higher elevations of Sri Lanka. Further, the DNA-based method can be used to identify the pathogen to avoid the introduction or entry of R. solanacearum into the country for the betterment of potato cultivation in Sri Lanka.KEYWORDS: Seed potato, Bacterial wilt, Ralstonia solanacearum, Quarantine pest, Rsol_fli

A global review on short peptides: frontiers and perspectives

Peptides are fragments of proteins that carry out biological functions. They act as signaling entities via all domains of life and interfere with protein-protein interactions, which are indispensable in bio-processes. Short peptides include fundamental molecular information for a prelude to the symphony of life. They have aroused considerable interest due to their unique features and great promise in innovative bio-therapies. This work focusing on the current state-of-the-art short peptide-based therapeutical developments is the first global review written by researchers from all continents, as a celebration of 100 years of peptide therapeutics since the commencement of insulin therapy in the 1920s. Peptide “drugs” initially played only the role of hormone analogs to balance disorders. Nowadays, they achieve numerous biomedical tasks, can cross membranes, or reach intracellular targets. The role of peptides in bio-processes can hardly be mimicked by other chemical substances. The article is divided into independent sections, which are related to either the progress in short peptide-based theranostics or the problems posing challenge to bio-medicine. In particular, the SWOT analysis of short peptides, their relevance in therapies of diverse diseases, improvements in (bio)synthesis platforms, advanced nano-supramolecular technologies, aptamers, altered peptide ligands and in silico methodologies to overcome peptide limitations, modern smart bio-functional materials, vaccines, and drug/gene-targeted delivery systems are discussed

Competition between decay and dissociation of core-excited OCS studied by X-ray scattering

We show the first evidence of dissociation during resonant inelastic soft X-ray scattering. Carbon and oxygen K-shell and sulfur L-shell resonant and non-resonant X-ray emission spectra were measured using monochromatic synchrotron radiation for excitation and ionization. After sulfur, L2,3 -> {\pi}*, {\sigma}* excitation, atomic lines are observed in the emission spectra as a consequence of competition between de-excitation and dissociation. In contrast the carbon and oxygen spectra show weaker line shape variations and no atomic lines. The spectra are compared to results from ab initio calculations and the discussion of the dissociation paths is based on calculated potential energy surfaces and atomic transition energies.Comment: 12 pages, 6 pictures, 2 tables, http://link.aps.org/doi/10.1103/PhysRevA.59.428

Effect of the GaAsP shell on optical properties of self-catalyzed GaAs nanowires grown on silicon

We realize growth of self-catalyzed core-shell GaAs/GaAsP nanowires (NWs) on Si substrates using molecular-beam epitaxy. Transmission electron microscopy (TEM) of single GaAs/GaAsP NWs confirms their high crystal quality and shows domination of the zinc-blende phase. This is further confirmed in optics of single NWs, studied using cw and time-resolved photoluminescence (PL). A detailed comparison with uncapped GaAs NWs emphasizes the effect of the GaAsP capping in suppressing the non-radiative surface states: significant PL enhancement in the core-shell structures exceeding 2000 times at 10K is observed; in uncapped NWs PL is quenched at 60K whereas single core-shell GaAs/GaAsP NWs exhibit bright emission even at room temperature. From analysis of the PL temperature dependence in both types of NW we are able to determine the main carrier escape mechanisms leading to the PL quench

Exclusion Limits on the WIMP-Nucleon Cross-Section from the First Run of the Cryogenic Dark Matter Search in the Soudan Underground Lab

The Cryogenic Dark Matter Search (CDMS-II) employs low-temperature Ge and Si detectors to seek Weakly Interacting Massive Particles (WIMPs) via their elastic scattering interactions with nuclei. Simultaneous measurements of both ionization and phonon energy provide discrimination against interactions of background particles. For recoil energies above 10 keV, events due to background photons are rejected with >99.99% efficiency. Electromagnetic events very near the detector surface can mimic nuclear recoils because of reduced charge collection, but these surface events are rejected with >96% efficiency by using additional information from the phonon pulse shape. Efficient use of active and passive shielding, combined with the the 2090 m.w.e. overburden at the experimental site in the Soudan mine, makes the background from neutrons negligible for this first exposure. All cuts are determined in a blind manner from in situ calibrations with external radioactive sources without any prior knowledge of the event distribution in the signal region. Resulting efficiencies are known to ~10%. A single event with a recoil of 64 keV passes all of the cuts and is consistent with the expected misidentification rate of surface-electron recoils. Under the assumptions for a standard dark matter halo, these data exclude previously unexplored parameter space for both spin-independent and spin-dependent WIMP-nucleon elastic scattering. The resulting limit on the spin-independent WIMP-nucleon elastic-scattering cross-section has a minimum of 4x10^-43 cm^2 at a WIMP mass of 60 GeV/c^2. The minimum of the limit for the spin-dependent WIMP-neutron elastic-scattering cross-section is 2x10^-37 cm^2 at a WIMP mass of 50 GeV/c^2.Comment: 37 pages, 42 figure